PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10000183m
Common NameCICLE_v10000183mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 947aa    MW: 104767 Da    PI: 5.6923
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10000183mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.7e-24147248199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++
  Ciclev10000183m 147 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RD 236
                      99*********************999*****954444.4.38************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+v+v+r+
  Ciclev10000183m 237 EKSQLMVGVRRA 248
                      77778*****97 PP

2Auxin_resp115.54.8e-38273356183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaas++s F+++YnPra++s+Fv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  Ciclev10000183m 273 AAHAASNRSQFTIFYNPRACPSDFVIPLAKYRKSVYgTQMSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 356
                      79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-47134276IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41140261IPR015300DNA-binding pseudobarrel domain
CDDcd100174.29E-23146247No hitNo description
PfamPF023625.4E-22147248IPR003340B3 DNA binding domain
SMARTSM010193.0E-25147249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.211147249IPR003340B3 DNA binding domain
PfamPF065074.3E-33273356IPR010525Auxin response factor
SuperFamilySSF542775.4E-10831911No hitNo description
PROSITE profilePS5174525.619832916IPR000270PB1 domain
PfamPF023093.2E-10832917IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MGSVEEKIKA GGLVIRAQTT LLEEMKLLKE MQDQSGARKA INSELWHACA GPLVFLPQVG  60
SLVYYFPQGH SEQVAASTKR SATSQIPNYP NLPSQLLCQV HNVTLHADKD TDEIYAQMSL  120
QPVNSEKDVF PIPDFGLKPS KHPSEFFCKT LTASDTSTHG GFSVPRRAAE KLFPPLDYTM  180
QPPTQELVVR DLHDNTWTFR HIYRGQPKRH LLTTGWSLFV GSKRLRAGDS VLFIRDEKSQ  240
LMVGVRRANR QQTALPSSVL SADSMHIGVL AAAAHAASNR SQFTIFYNPR ACPSDFVIPL  300
AKYRKSVYGT QMSVGMRFGM MFETEESGKR RYMGTIVGIS DLDPLRWPGS KWRNLQVEWD  360
EPGCSDKQKR VSPWEIETPE SLFIFPSLTS GLKRPFHSGI LATETEWGSL IKRPLACPEI  420
APGVMPYSSI SNLCSEQLIK MMLKPQLVNN PGSFAASSLQ ETSGAKGAHL EEVKTLQSTI  480
NQKPRLVPSE MNRIDNQNCS QICLNQADTV NSSLSRIHIP EKPHPPSKCE KQAPPGMNTD  540
HLKSEPRQSI EQSSNLTSAA DCSMEKPSGP LNPQNLVNQH AFHNQNEGLL QLQSSWPMQS  600
QLESVFQAQQ INVPQSDSTA HSGSLPILDT DEWMSHTSCN SLAGTYNRSP GPLPMFGLQE  660
PSTMLPEVIN PSLSFPGQEM WDHQLNNLRF LSPVDPLTSF TQQDHCSLNS SGLRDLSDES  720
NNQSGIYSCL NIDVSNGGST MIDHSVSSAI LDEFCTLKDA NFQNPPDCLM NTFSSSQDVQ  780
SQITSASLAD SQAFSRQDFP DNSGGTSSSN VDFDESSLLQ NTSWQPVVPP MRTYTKVQKT  840
GSVGRSIDVT NFKNYDELCS AIERMFGLEG LLNDPRGTEW KLVYVDYEND VLLVGDDPWE  900
EFVGCVRCIR ILSPQEVQQM SEEGMKLLNS AAMQGIDCTK PEGGRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013815392Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.223846e-46abscission zone
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435146.10.0hypothetical protein CICLE_v10000183mg
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLV4TFD40.0V4TFD4_9R
STRINGVIT_18s0001g13930.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein